PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011093548.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family C3H
Protein Properties Length: 710aa    MW: 76670 Da    PI: 6.4056
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011093548.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.32.3e-07287307526
                     --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                     +C++f++ G C++Gd C +aHg
  XP_011093548.1 287 PCPDFRK-GACRRGDMCEYAHG 307
                     8******.*************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.25.40.201.2E-1712140IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484038.55E-1716139IPR020683Ankyrin repeat-containing domain
PfamPF127965.3E-1156129IPR020683Ankyrin repeat-containing domain
CDDcd002045.81E-1458138No hitNo description
PROSITE profilePS5029716.17560136IPR020683Ankyrin repeat-containing domain
SMARTSM002480.136090IPR002110Ankyrin repeat
PRINTSPR014151.0E-56176IPR002110Ankyrin repeat
PROSITE profilePS5008812.34295130IPR002110Ankyrin repeat
SMARTSM002481.0E-495127IPR002110Ankyrin repeat
PRINTSPR014151.0E-5114128IPR002110Ankyrin repeat
SMARTSM003564.0E-6282308IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.4E-4286309IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.582287309IPR000571Zinc finger, CCCH-type
PfamPF006426.3E-5287307IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-4315345IPR000571Zinc finger, CCCH-type
SMARTSM0035664317340IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 710 aa     Download sequence    Send to blast
MKGMSKLSVE TEDSFSSLLE FAANNDIEAF RRSIELDLSG VDEAGLWYVR KIGSKQITQD  60
ERTPLMVAAT YGSVDVLKLI VALPEVDLNR SCGQDKWTAL HCAAFGGSVN AFDVVKLLLS  120
AGADPNIEDA NGRRPVDVII VPPKLPGAKA ALEDLLMNST SDGSVVDCNL HVSISTSSAS  180
SPVLSSSPSP GSRSPCSQSD TVSSPTAAKF SDVPANSVSE KKQYPVDPSL PDIRNSIYST  240
DEFRMFSFKV RPCSRAYSHD WTECPFVHPG ENARRRDPRK YHYSCVPCPD FRKGACRRGD  300
MCEYAHGVFE CWLHPAQYRT RLCKDGTSCA RQVCFFAHTQ EELRPLYVST GSGVPSPRSA  360
ASAASFMDMA AALSLLPGSP TSHSVMSPSA FNQTLSPTAN GMPHSSAAWP QPNVPTLHLP  420
GSNLQSSRLR SSLSARDIPP EDLNMLQDFD AQQLVLNDMA CFSQSQPNSA MLNRSGRSKS  480
TLTPSNLEEL FSAEITSSPR FPDQAVASGV FSPRHKSAVL NQFQQQQSIL SPINTNVFSP  540
RNVEHPLLQA SFGVSSPRMS PRSLDTVSPM SARLSAFAQR EKQQQQMHSL SSRDLGTGHG  600
PIVGPPVAAA WSKWGSPNGK ADWSVGGDDQ SCLKKSSTVE LNNGGNEPDL SWVQSLVKES  660
PPEMMDKTAA SASGAAPSGE CLKPNSQIDS IDHSVLGAWL EQMQLDQLVV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011093548.10.0PREDICTED: zinc finger CCCH domain-containing protein 30-like
RefseqXP_011093549.10.0PREDICTED: zinc finger CCCH domain-containing protein 30-like
SwissprotP937550.0C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBLA0A068UH580.0A0A068UH58_COFCA; Uncharacterized protein
STRINGPGSC0003DMT4000175450.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8832488
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.10.0CCCH-type zinc finger protein with ARM repeat domain